Atauschii AET3Gv20921500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20921500 [ AET3Gv20921500] |
3D | 529080610 | 529083983 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20921500.1 AET3Gv20921500.1 |
High | No | 872 | OG0006912 | Get ORF Coding potential... Type: noncoding Potential: -0.316 Folding energies... MFEI: -42.041 AMFE: -0.636 GC content %: 66.055 | |
| Atauschii_AET3Gv20921500.2 AET3Gv20921500.2 |
High | No | 543 | OG0073571 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -17.882 AMFE: -0.347 GC content %: 51.565 | |
| Atauschii_AET3Gv20921500.3 AET3Gv20921500.3 |
High | No | 824 | OG0006912 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -43.434 AMFE: -0.652 GC content %: 66.626 | |
| Atauschii_AET3Gv20921500.4 AET3Gv20921500.4 |
High | No | 794 | OG0006912 | Get ORF Coding potential... Type: noncoding Potential: -0.312 Folding energies... MFEI: -40.617 AMFE: -0.626 GC content %: 64.861 | |
| Atauschii_AET3Gv20921500.5 AET3Gv20921500.5 |
High | No | 684 | OG0006912 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -42.222 AMFE: -0.642 GC content %: 65.789 | |
| Atauschii_AET3Gv20921500.6 AET3Gv20921500.6 |
High | No | 727 | OG0006912 | Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -40.715 AMFE: -0.615 GC content %: 66.162 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
