Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20935400 [ AET3Gv20935400] |
3D | 535756458 | 535766541 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20935400.1 AET3Gv20935400.1 |
High | No | 768 | OG0073597 | Get ORF Coding potential... Type: noncoding Potential: -0.481 Folding energies... MFEI: -40.794 AMFE: -0.667 GC content %: 61.198 | |
Atauschii_AET3Gv20935400.2 AET3Gv20935400.2 |
Low | No | 697 | OG0073598 | Get ORF Coding potential... Type: noncoding Potential: -0.562 Folding energies... MFEI: -39.699 AMFE: -0.702 GC content %: 56.528 | |
Atauschii_AET3Gv20935400.3 AET3Gv20935400.3 |
Low | No | 491 | OG0073599 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -41.141 AMFE: -0.692 GC content %: 59.470 | |
Atauschii_AET3Gv20935400.4 AET3Gv20935400.4 |
Low | No | 796 | OG0073600 | Get ORF Coding potential... Type: noncoding Potential: -0.352 Folding energies... MFEI: -38.781 AMFE: -0.674 GC content %: 57.538 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20935400.3 | SwissProt | 2021-04-01 | Q8W453 | 3.21e-4 |
Atauschii_AET3Gv20935400.4 | SwissProt | 2021-04-01 | Q8W453 | 4.5e-4 |
Atauschii_AET3Gv20935400.2 | SwissProt | 2021-04-01 | Q8W453 | 3.34e-4 |