Atauschii AET3Gv20953100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20953100 [ AET3Gv20953100] |
3D | 544638951 | 544644408 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20953100.12 AET3Gv20953100.12 |
High | No | 412 | OG0073632 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -40.971 AMFE: -0.621 GC content %: 66.019 | |
| Atauschii_AET3Gv20953100.22 AET3Gv20953100.22 |
High | No | 1839 | OG0009953 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -28.646 AMFE: -0.658 GC content %: 43.556 | |
| Atauschii_AET3Gv20953100.23 AET3Gv20953100.23 |
High | No | 2507 | OG0009953 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -28.026 AMFE: -0.674 GC content %: 41.604 | |
| Atauschii_AET3Gv20953100.24 AET3Gv20953100.24 |
High | No | 2010 | OG0009953 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.756 AMFE: -0.657 GC content %: 43.781 | |
| Atauschii_AET3Gv20953100.25 AET3Gv20953100.25 |
High | No | 705 | OG0009953 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -27.084 AMFE: -0.570 GC content %: 47.518 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
