Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20969600 [ AET3Gv20969600] |
3D | 551775606 | 551800231 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20969600.15 AET3Gv20969600.15 |
Low | No | 960 | OG0025147 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -32.531 AMFE: -0.606 GC content %: 53.646 | |
Atauschii_AET3Gv20969600.16 AET3Gv20969600.16 |
Low | No | 558 | OG0025147 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -22.276 AMFE: -0.531 GC content %: 41.935 | |
Atauschii_AET3Gv20969600.9 AET3Gv20969600.9 |
Low | No | 383 | OG0016260 | Get ORF Coding potential... Type: noncoding Potential: -0.283 Folding energies... MFEI: -22.402 AMFE: -0.540 GC content %: 41.514 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20969600.9 | SwissProt | 2021-04-01 | Q9SSD2 | 9.63e-14 |
Atauschii_AET3Gv20969600.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Atauschii_AET3Gv20969600.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |