Atauschii AET3Gv20982000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20982000 [ AET3Gv20982000] |
3D | 556687463 | 556713375 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv20982000.10 AET3Gv20982000.10 |
Low | No | 2326 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -22.739 AMFE: -0.620 GC content %: 36.672 | |
| Atauschii_AET3Gv20982000.11 AET3Gv20982000.11 |
High | No | 1106 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -22.242 AMFE: -0.600 GC content %: 37.071 | |
| Atauschii_AET3Gv20982000.12 AET3Gv20982000.12 |
High | No | 976 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -23.514 AMFE: -0.574 GC content %: 40.984 | |
| Atauschii_AET3Gv20982000.2 AET3Gv20982000.2 |
Low | No | 1568 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -23.776 AMFE: -0.612 GC content %: 38.839 | |
| Atauschii_AET3Gv20982000.3 AET3Gv20982000.3 |
Low | No | 1566 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -23.704 AMFE: -0.612 GC content %: 38.761 | |
| Atauschii_AET3Gv20982000.4 AET3Gv20982000.4 |
High | No | 476 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -25.861 AMFE: -0.603 GC content %: 42.857 | |
| Atauschii_AET3Gv20982000.5 AET3Gv20982000.5 |
High | No | 1466 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -28.554 AMFE: -0.629 GC content %: 45.430 | |
| Atauschii_AET3Gv20982000.6 AET3Gv20982000.6 |
High | No | 1750 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -25.834 AMFE: -0.602 GC content %: 42.914 | |
| Atauschii_AET3Gv20982000.9 AET3Gv20982000.9 |
High | No | 1518 | OG0002369 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -23.650 AMFE: -0.610 GC content %: 38.801 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv20982000.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20982000.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET3Gv20982000.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
