GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv20989200 [ AET3Gv20989200]	3D	558212156	558220067	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv20989200.1 AET3Gv20989200.1	High	No	2462	OG0002906		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -24.206 AMFE: -0.617 GC content %: 39.236
Atauschii_AET3Gv20989200.2 AET3Gv20989200.2	High	No	2458	OG0002906		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -23.525 AMFE: -0.596 GC content %: 39.463
Atauschii_AET3Gv20989200.9 AET3Gv20989200.9	High	No	793	OG0002906		Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -26.525 AMFE: -0.655 GC content %: 40.479

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).