Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20994400 [ AET3Gv20994400] |
3D | 560534788 | 560540794 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20994400.11 AET3Gv20994400.11 |
High | No | 808 | OG0025155 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -33.750 AMFE: -0.628 GC content %: 53.713 | |
Atauschii_AET3Gv20994400.14 AET3Gv20994400.14 |
Low | No | 326 | OG0073714 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -35.245 AMFE: -0.676 GC content %: 52.147 | |
Atauschii_AET3Gv20994400.15 AET3Gv20994400.15 |
High | No | 496 | OG0073715 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -38.185 AMFE: -0.613 GC content %: 62.298 | |
Atauschii_AET3Gv20994400.5 AET3Gv20994400.5 |
High | No | 1023 | OG0025155 | Get ORF Coding potential... Type: noncoding Potential: -0.589 Folding energies... MFEI: -31.554 AMFE: -0.640 GC content %: 49.267 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20994400.14 | SwissProt | 2021-04-01 | Q68CP4 | 2.97e-4 |