Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20996900 [ AET3Gv20996900] |
3D | 561242688 | 561265102 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20996900.11 AET3Gv20996900.11 |
Low | No | 1754 | OG0025156 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -25.336 AMFE: -0.640 GC content %: 39.567 | |
Atauschii_AET3Gv20996900.2 AET3Gv20996900.2 |
High | No | 1254 | OG0025157 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -22.735 AMFE: -0.608 GC content %: 37.400 | |
Atauschii_AET3Gv20996900.4 AET3Gv20996900.4 |
High | No | 1522 | OG0025157 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -23.653 AMFE: -0.638 GC content %: 37.057 | |
Atauschii_AET3Gv20996900.6 AET3Gv20996900.6 |
Low | No | 2620 | OG0025156 | Get ORF Coding potential... Type: noncoding Potential: -0.015 Folding energies... MFEI: -25.195 AMFE: -0.641 GC content %: 39.275 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20996900.11 | SwissProt | 2021-04-01 | P49298 | 2.39e-6 |
Atauschii_AET3Gv20996900.6 | SwissProt | 2021-04-01 | Q8L5U0 | 9.99e-36 |