GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv21021600 [ AET3Gv21021600]	3D	569733026	570152391	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv21021600.18 AET3Gv21021600.18	Low	No	622	OG0025164		Get ORF Coding potential... Type: coding Potential: 0.038 Folding energies... MFEI: -33.521 AMFE: -0.644 GC content %: 52.090
Atauschii_AET3Gv21021600.30 AET3Gv21021600.30	High	No	825	OG0025165		Get ORF Coding potential... Type: noncoding Potential: -0.305 Folding energies... MFEI: -29.200 AMFE: -0.649 GC content %: 44.970
Atauschii_AET3Gv21021600.34 AET3Gv21021600.34	High	No	1387	OG0025164		Get ORF Coding potential... Type: noncoding Potential: -0.313 Folding energies... MFEI: -29.690 AMFE: -0.649 GC content %: 45.782
Atauschii_AET3Gv21021600.8 AET3Gv21021600.8	High	No	586	OG0073757		Get ORF Coding potential... Type: noncoding Potential: -1.346 Folding energies... MFEI: -26.075 AMFE: -0.616 GC content %: 42.321
Atauschii_AET3Gv21021600.9 AET3Gv21021600.9	High	No	782	OG0073758		Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -29.783 AMFE: -0.631 GC content %: 47.187

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).