Atauschii AET3Gv21034600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21034600 [ AET3Gv21034600] |
3D | 573698416 | 573702029 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21034600.1 AET3Gv21034600.1 |
Low | No | 2949 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -27.006 AMFE: -0.628 GC content %: 42.998 | |
| Atauschii_AET3Gv21034600.10 AET3Gv21034600.10 |
Low | No | 2745 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.743 AMFE: -0.612 GC content %: 43.679 | |
| Atauschii_AET3Gv21034600.11 AET3Gv21034600.11 |
High | No | 526 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -29.030 AMFE: -0.460 GC content %: 63.118 | |
| Atauschii_AET3Gv21034600.2 AET3Gv21034600.2 |
Low | No | 993 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -29.869 AMFE: -0.584 GC content %: 51.158 | |
| Atauschii_AET3Gv21034600.3 AET3Gv21034600.3 |
Low | No | 2989 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -26.895 AMFE: -0.624 GC content %: 43.125 | |
| Atauschii_AET3Gv21034600.4 AET3Gv21034600.4 |
Low | No | 2997 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -26.800 AMFE: -0.625 GC content %: 42.910 | |
| Atauschii_AET3Gv21034600.5 AET3Gv21034600.5 |
Low | No | 3014 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -25.524 AMFE: -0.661 GC content %: 38.620 | |
| Atauschii_AET3Gv21034600.6 AET3Gv21034600.6 |
Low | No | 1453 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -27.894 AMFE: -0.593 GC content %: 47.006 | |
| Atauschii_AET3Gv21034600.7 AET3Gv21034600.7 |
Low | No | 3409 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -26.489 AMFE: -0.626 GC content %: 42.329 | |
| Atauschii_AET3Gv21034600.8 AET3Gv21034600.8 |
Low | No | 1186 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -33.204 AMFE: -0.614 GC content %: 54.047 | |
| Atauschii_AET3Gv21034600.9 AET3Gv21034600.9 |
Low | No | 2870 | OG0001568 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -26.411 AMFE: -0.611 GC content %: 43.206 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv21034600.6 | SwissProt | 2021-04-01 | Q8GWE6 | 9.05e-8 |
| Atauschii_AET3Gv21034600.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/LOA; RC/Helitron; SINE/tRNA | |
| Atauschii_AET3Gv21034600.7 | SwissProt | 2021-04-01 | Q8GWE6 | 2.72e-7 |
| Atauschii_AET3Gv21034600.1 | SwissProt | 2021-04-01 | Q8GWE6 | 2.26e-7 |
| Atauschii_AET3Gv21034600.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/LOA; RC/Helitron; SINE/tRNA | |
| Atauschii_AET3Gv21034600.8 | SwissProt | 2021-04-01 | Q8GWE6 | 5.46e-8 |
| Atauschii_AET3Gv21034600.2 | SwissProt | 2021-04-01 | Q8GWE6 | 4.01e-8 |
| Atauschii_AET3Gv21034600.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/LOA; RC/Helitron; SINE/tRNA | |
| Atauschii_AET3Gv21034600.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/LOA; RC/Helitron; SINE/tRNA | |
| Atauschii_AET3Gv21034600.4 | SwissProt | 2021-04-01 | Q8GWE6 | 2.31e-7 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
