Atauschii AET3Gv21038200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21038200 [ AET3Gv21038200] |
3D | 574733646 | 574777767 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21038200.10 AET3Gv21038200.10 |
Low | No | 1156 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -27.863 AMFE: -0.643 GC content %: 43.339 | |
| Atauschii_AET3Gv21038200.12 AET3Gv21038200.12 |
Low | No | 837 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.140 Folding energies... MFEI: -29.164 AMFE: -0.631 GC content %: 46.237 | |
| Atauschii_AET3Gv21038200.13 AET3Gv21038200.13 |
Low | No | 1141 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.180 Folding energies... MFEI: -27.274 AMFE: -0.631 GC content %: 43.208 | |
| Atauschii_AET3Gv21038200.14 AET3Gv21038200.14 |
Low | No | 1171 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -28.036 AMFE: -0.640 GC content %: 43.809 | |
| Atauschii_AET3Gv21038200.16 AET3Gv21038200.16 |
Low | No | 1715 | OG0073783 | Get ORF Coding potential... Type: noncoding Potential: -0.263 Folding energies... MFEI: -32.385 AMFE: -0.669 GC content %: 48.397 | |
| Atauschii_AET3Gv21038200.17 AET3Gv21038200.17 |
High | No | 1594 | OG0025172 | Get ORF Coding potential... Type: noncoding Potential: -0.434 Folding energies... MFEI: -31.581 AMFE: -0.665 GC content %: 47.491 | |
| Atauschii_AET3Gv21038200.18 AET3Gv21038200.18 |
Low | No | 653 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -29.357 AMFE: -0.616 GC content %: 47.626 | |
| Atauschii_AET3Gv21038200.19 AET3Gv21038200.19 |
Low | No | 1571 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.440 Folding energies... MFEI: -27.562 AMFE: -0.647 GC content %: 42.584 | |
| Atauschii_AET3Gv21038200.20 AET3Gv21038200.20 |
Low | No | 693 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -28.066 AMFE: -0.606 GC content %: 46.320 | |
| Atauschii_AET3Gv21038200.21 AET3Gv21038200.21 |
Low | No | 1851 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.342 Folding energies... MFEI: -27.461 AMFE: -0.662 GC content %: 41.491 | |
| Atauschii_AET3Gv21038200.22 AET3Gv21038200.22 |
Low | No | 1526 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.258 Folding energies... MFEI: -28.329 AMFE: -0.649 GC content %: 43.644 | |
| Atauschii_AET3Gv21038200.23 AET3Gv21038200.23 |
Low | No | 1657 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -28.678 AMFE: -0.665 GC content %: 43.150 | |
| Atauschii_AET3Gv21038200.25 AET3Gv21038200.25 |
Low | No | 866 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.354 Folding energies... MFEI: -30.831 AMFE: -0.645 GC content %: 47.806 | |
| Atauschii_AET3Gv21038200.26 AET3Gv21038200.26 |
Low | No | 1381 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -0.423 Folding energies... MFEI: -27.944 AMFE: -0.649 GC content %: 43.085 | |
| Atauschii_AET3Gv21038200.28 AET3Gv21038200.28 |
Low | No | 1177 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -26.746 AMFE: -0.677 GC content %: 39.507 | |
| Atauschii_AET3Gv21038200.7 AET3Gv21038200.7 |
Low | No | 894 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -28.557 AMFE: -0.626 GC content %: 45.638 | |
| Atauschii_AET3Gv21038200.8 AET3Gv21038200.8 |
Low | No | 1772 | OG0000870 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -27.805 AMFE: -0.664 GC content %: 41.874 | |
| Atauschii_AET3Gv21038200.9 AET3Gv21038200.9 |
Low | No | 1265 | OG0025173 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -28.988 AMFE: -0.661 GC content %: 43.874 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv21038200.12 | SwissProt | 2021-04-01 | A8XDJ2 | 2.5e-13 |
| Atauschii_AET3Gv21038200.13 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Atauschii_AET3Gv21038200.26 | SwissProt | 2021-04-01 | Q9CQX0 | 1.09e-11 |
| Atauschii_AET3Gv21038200.20 | SwissProt | 2021-04-01 | Q9CQX0 | 7.99e-10 |
| Atauschii_AET3Gv21038200.26 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Atauschii_AET3Gv21038200.13 | SwissProt | 2021-04-01 | A8XDJ2 | 5.36e-13 |
| Atauschii_AET3Gv21038200.14 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Atauschii_AET3Gv21038200.7 | SwissProt | 2021-04-01 | A8XDJ2 | 1.98e-8 |
| Atauschii_AET3Gv21038200.21 | SwissProt | 2021-04-01 | Q9CQX0 | 1.65e-11 |
| Atauschii_AET3Gv21038200.28 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
