Atauschii AET3Gv21059700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21059700 [ AET3Gv21059700] |
3D | 581395318 | 581499247 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21059700.1 AET3Gv21059700.1 |
Low | No | 2024 | OG0006919 | Get ORF Coding potential... Type: noncoding Potential: -0.384 Folding energies... MFEI: -32.971 AMFE: -0.680 GC content %: 48.518 | |
| Atauschii_AET3Gv21059700.16 AET3Gv21059700.16 |
Low | No | 1521 | OG0073814 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -30.394 AMFE: -0.648 GC content %: 46.877 | |
| Atauschii_AET3Gv21059700.20 AET3Gv21059700.20 |
Low | No | 745 | OG0073815 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -27.638 AMFE: -0.622 GC content %: 44.430 | |
| Atauschii_AET3Gv21059700.3 AET3Gv21059700.3 |
High | No | 601 | OG0006919 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -27.354 AMFE: -0.637 GC content %: 42.928 | |
| Atauschii_AET3Gv21059700.4 AET3Gv21059700.4 |
High | No | 1452 | OG0006919 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -29.931 AMFE: -0.642 GC content %: 46.625 | |
| Atauschii_AET3Gv21059700.5 AET3Gv21059700.5 |
Low | No | 1318 | OG0006919 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -31.411 AMFE: -0.647 GC content %: 48.558 | |
| Atauschii_AET3Gv21059700.6 AET3Gv21059700.6 |
Low | No | 973 | OG0006919 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -30.247 AMFE: -0.670 GC content %: 45.118 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv21059700.20 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET3Gv21059700.1 | SwissProt | 2021-04-01 | Q7XBQ9 | 1.08e-5 |
| Atauschii_AET3Gv21059700.16 | SwissProt | 2021-04-01 | Q7XA40 | 8.2e-4 |
| Atauschii_AET3Gv21059700.5 | SwissProt | 2021-04-01 | Q7XBQ9 | 5.39e-6 |
| Atauschii_AET3Gv21059700.6 | SwissProt | 2021-04-01 | Q7XBQ9 | 2.76e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
