Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv21133700 [ AET3Gv21133700] |
3D | 596105357 | 596108536 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv21133700.1 AET3Gv21133700.1 |
Low | No | 2943 | OG0002907 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -27.214 AMFE: -0.653 GC content %: 41.658 | |
Atauschii_AET3Gv21133700.2 AET3Gv21133700.2 |
Low | No | 2286 | OG0002907 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -27.568 AMFE: -0.642 GC content %: 42.957 | |
Atauschii_AET3Gv21133700.3 AET3Gv21133700.3 |
Low | No | 1234 | OG0002907 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -25.527 AMFE: -0.624 GC content %: 40.924 | |
Atauschii_AET3Gv21133700.4 AET3Gv21133700.4 |
Low | No | 1310 | OG0002907 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -26.618 AMFE: -0.566 GC content %: 47.023 | |
Atauschii_AET3Gv21133700.5 AET3Gv21133700.5 |
Low | No | 2018 | OG0002907 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -26.972 AMFE: -0.609 GC content %: 44.301 | |
Atauschii_AET3Gv21133700.6 AET3Gv21133700.6 |
Low | No | 1224 | OG0002907 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -28.023 AMFE: -0.582 GC content %: 48.121 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv21133700.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21133700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21133700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21133700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21133700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21133700.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |