GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv21138400 [ AET3Gv21138400]	3D	598080501	598087178	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv21138400.10 AET3Gv21138400.10	High	No	732	OG0006922		Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -26.721 AMFE: -0.629 GC content %: 42.486
Atauschii_AET3Gv21138400.12 AET3Gv21138400.12	High	No	344	OG0006922		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -38.110 AMFE: -0.568 GC content %: 67.151
Atauschii_AET3Gv21138400.4 AET3Gv21138400.4	High	No	5362	OG0006922		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.163 AMFE: -0.687 GC content %: 39.556
Atauschii_AET3Gv21138400.5 AET3Gv21138400.5	High	No	6485	OG0006922		Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -26.914 AMFE: -0.661 GC content %: 40.740
Atauschii_AET3Gv21138400.8 AET3Gv21138400.8	High	No	1193	OG0006922		Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -27.301 AMFE: -0.635 GC content %: 43.001

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).