GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv21145900 [ AET3Gv21145900]	3D	600211599	600217056	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv21145900.10 AET3Gv21145900.10	High	No	231	OG0006923		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -23.896 AMFE: -0.531 GC content %: 45.022
Atauschii_AET3Gv21145900.11 AET3Gv21145900.11	High	No	537	OG0006923		Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -23.799 AMFE: -0.565 GC content %: 42.086
Atauschii_AET3Gv21145900.7 AET3Gv21145900.7	High	No	1438	OG0006923		Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -26.711 AMFE: -0.613 GC content %: 43.602
Atauschii_AET3Gv21145900.8 AET3Gv21145900.8	High	No	1518	OG0006923		Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -26.759 AMFE: -0.612 GC content %: 43.742
Atauschii_AET3Gv21145900.9 AET3Gv21145900.9	High	No	1135	OG0006923		Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -26.300 AMFE: -0.612 GC content %: 42.996

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).