Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv21203900 [ AET3Gv21203900] |
3D | 614283188 | 614286688 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv21203900.3 AET3Gv21203900.3 |
Low | No | 1757 | OG0001289 | Get ORF Coding potential... Type: noncoding Potential: -0.460 Folding energies... MFEI: -25.839 AMFE: -0.649 GC content %: 39.841 | |
Atauschii_AET3Gv21203900.4 AET3Gv21203900.4 |
Low | No | 1258 | OG0001289 | Get ORF Coding potential... Type: noncoding Potential: -0.687 Folding energies... MFEI: -26.693 AMFE: -0.634 GC content %: 42.130 | |
Atauschii_AET3Gv21203900.5 AET3Gv21203900.5 |
Low | No | 1263 | OG0001289 | Get ORF Coding potential... Type: noncoding Potential: -0.566 Folding energies... MFEI: -24.711 AMFE: -0.617 GC content %: 40.063 | |
Atauschii_AET3Gv21203900.6 AET3Gv21203900.6 |
Low | No | 1178 | OG0001289 | Get ORF Coding potential... Type: noncoding Potential: -0.551 Folding energies... MFEI: -25.475 AMFE: -0.625 GC content %: 40.747 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv21203900.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21203900.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21203900.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv21203900.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |