GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv21208500 [ AET3Gv21208500]	3D	615126181	615129321	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv21208500.1 AET3Gv21208500.1	High	No	439	OG0074017		Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -34.556 AMFE: -0.632 GC content %: 54.670
Atauschii_AET3Gv21208500.6 AET3Gv21208500.6	Low	No	804	OG0074018		Get ORF Coding potential... Type: noncoding Potential: -0.369 Folding energies... MFEI: -30.435 AMFE: -0.600 GC content %: 50.746

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv21208500.6	SwissProt	2021-04-01	Q8BJM3	1.01e-7

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).