Atauschii AET3Gv21218000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21218000 [ AET3Gv21218000] |
3D | 616974371 | 617186176 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21218000.1 AET3Gv21218000.1 |
High | No | 431 | OG0025210 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -25.476 AMFE: -0.610 GC content %: 41.763 | |
| Atauschii_AET3Gv21218000.2 AET3Gv21218000.2 |
High | No | 436 | OG0025210 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -24.725 AMFE: -0.599 GC content %: 41.284 | |
| Atauschii_AET3Gv21218000.3 AET3Gv21218000.3 |
High | No | 418 | OG0074038 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -26.124 AMFE: -0.617 GC content %: 42.344 | |
| Atauschii_AET3Gv21218000.4 AET3Gv21218000.4 |
High | No | 379 | OG0074039 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -25.066 AMFE: -0.646 GC content %: 38.786 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
