GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv21225900 [ AET3Gv21225900]	3D	618677660	618681517	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv21225900.1 AET3Gv21225900.1	High	No	410	OG0074046		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -24.049 AMFE: -0.594 GC content %: 40.488
Atauschii_AET3Gv21225900.5 AET3Gv21225900.5	High	No	1355	OG0004735		Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -29.830 AMFE: -0.667 GC content %: 44.723
Atauschii_AET3Gv21225900.6 AET3Gv21225900.6	High	No	753	OG0004735		Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -33.400 AMFE: -0.676 GC content %: 49.402
Atauschii_AET3Gv21225900.7 AET3Gv21225900.7	High	No	1582	OG0004735		Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -31.220 AMFE: -0.696 GC content %: 44.880
Atauschii_AET3Gv21225900.9 AET3Gv21225900.9	High	No	878	OG0074047		Get ORF Coding potential... Type: noncoding Potential: -0.534 Folding energies... MFEI: -33.269 AMFE: -0.702 GC content %: 47.380

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).