GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET3Gv21237000 [ AET3Gv21237000]	3D	621300192	621303852	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET3Gv21237000.3 AET3Gv21237000.3	Low	No	490	OG0074070		Get ORF Coding potential... Type: noncoding Potential: -0.458 Folding energies... MFEI: -39.633 AMFE: -0.611 GC content %: 64.898
Atauschii_AET3Gv21237000.6 AET3Gv21237000.6	High	No	271	OG0025213		Get ORF Coding potential... Type: noncoding Potential: -1.465 Folding energies... MFEI: -21.624 AMFE: -0.558 GC content %: 38.745

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET3Gv21237000.3	SwissProt	2021-04-01	Q9CQT9	3.85e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).