Atauschii AET3Gv21240700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21240700 [ AET3Gv21240700] |
3D | 622171397 | 622219269 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21240700.1 AET3Gv21240700.1 |
High | No | 279 | OG0074077 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -34.194 AMFE: -0.542 GC content %: 63.082 | |
| Atauschii_AET3Gv21240700.13 AET3Gv21240700.13 |
High | No | 751 | OG0025215 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -27.164 AMFE: -0.637 GC content %: 42.610 | |
| Atauschii_AET3Gv21240700.14 AET3Gv21240700.14 |
High | No | 668 | OG0016291 | Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -38.368 AMFE: -0.736 GC content %: 52.096 | |
| Atauschii_AET3Gv21240700.15 AET3Gv21240700.15 |
High | No | 546 | OG0016291 | Get ORF Coding potential... Type: noncoding Potential: -1.474 Folding energies... MFEI: -31.960 AMFE: -0.712 GC content %: 44.872 | |
| Atauschii_AET3Gv21240700.2 AET3Gv21240700.2 |
High | No | 270 | OG0074078 | Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -31.630 AMFE: -0.527 GC content %: 60.000 | |
| Atauschii_AET3Gv21240700.5 AET3Gv21240700.5 |
High | No | 332 | OG0025216 | Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -42.711 AMFE: -0.653 GC content %: 65.361 | |
| Atauschii_AET3Gv21240700.6 AET3Gv21240700.6 |
High | No | 411 | OG0025216 | Get ORF Coding potential... Type: noncoding Potential: -0.477 Folding energies... MFEI: -40.389 AMFE: -0.648 GC content %: 62.287 | |
| Atauschii_AET3Gv21240700.7 AET3Gv21240700.7 |
Low | No | 938 | OG0025215 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -34.339 AMFE: -0.682 GC content %: 50.320 | |
| Atauschii_AET3Gv21240700.8 AET3Gv21240700.8 |
High | No | 250 | OG0074079 | Get ORF Coding potential... Type: noncoding Potential: -0.367 Folding energies... MFEI: -49.720 AMFE: -0.723 GC content %: 68.800 | |
| Atauschii_AET3Gv21240700.9 AET3Gv21240700.9 |
High | No | 376 | OG0025217 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -27.793 AMFE: -0.649 GC content %: 42.819 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv21240700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
