Atauschii AET3Gv21250500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21250500 [ AET3Gv21250500] |
3D | 624593399 | 624596416 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET3Gv21250500.1 AET3Gv21250500.1 |
Low | No | 2467 | OG0003741 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -32.501 AMFE: -0.689 GC content %: 47.142 | |
| Atauschii_AET3Gv21250500.2 AET3Gv21250500.2 |
Low | No | 2580 | OG0003741 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -31.686 AMFE: -0.671 GC content %: 47.209 | |
| Atauschii_AET3Gv21250500.3 AET3Gv21250500.3 |
Low | No | 1811 | OG0003741 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -35.456 AMFE: -0.690 GC content %: 51.408 | |
| Atauschii_AET3Gv21250500.4 AET3Gv21250500.4 |
Low | No | 2131 | OG0003741 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -30.878 AMFE: -0.669 GC content %: 46.129 | |
| Atauschii_AET3Gv21250500.5 AET3Gv21250500.5 |
Low | No | 1490 | OG0003741 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -33.705 AMFE: -0.683 GC content %: 49.329 | |
| Atauschii_AET3Gv21250500.6 AET3Gv21250500.6 |
Low | No | 1835 | OG0003741 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -31.711 AMFE: -0.690 GC content %: 45.940 | |
| Atauschii_AET3Gv21250500.7 AET3Gv21250500.7 |
Low | No | 1079 | OG0003741 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -28.369 AMFE: -0.685 GC content %: 41.427 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET3Gv21250500.4 | SwissProt | 2021-04-01 | Q9LR09 | 1.02e-7 |
| Atauschii_AET3Gv21250500.5 | SwissProt | 2021-04-01 | Q9LR09 | 2.13e-5 |
| Atauschii_AET3Gv21250500.6 | SwissProt | 2021-04-01 | Q9LR09 | 8.53e-8 |
| Atauschii_AET3Gv21250500.1 | SwissProt | 2021-04-01 | Q9LR09 | 8.19e-8 |
| Atauschii_AET3Gv21250500.7 | SwissProt | 2021-04-01 | Q9LR09 | 1.56e-7 |
| Atauschii_AET3Gv21250500.2 | SwissProt | 2021-04-01 | Q9LR09 | 1.25e-7 |
| Atauschii_AET3Gv21250500.3 | SwissProt | 2021-04-01 | Q9LR09 | 8.4e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
