Atauschii AET4Gv20009000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20009000 [ AET4Gv20009000] |
4D | 2109535 | 2120928 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20009000.11 AET4Gv20009000.11 |
Low | No | 538 | OG0074143 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -26.599 AMFE: -0.650 GC content %: 40.892 | |
| Atauschii_AET4Gv20009000.25 AET4Gv20009000.25 |
Low | No | 725 | OG0025225 | Get ORF Coding potential... Type: noncoding Potential: -0.207 Folding energies... MFEI: -30.372 AMFE: -0.661 GC content %: 45.931 | |
| Atauschii_AET4Gv20009000.26 AET4Gv20009000.26 |
Low | No | 698 | OG0025225 | Get ORF Coding potential... Type: noncoding Potential: -0.197 Folding energies... MFEI: -27.564 AMFE: -0.623 GC content %: 44.269 | |
| Atauschii_AET4Gv20009000.28 AET4Gv20009000.28 |
Low | No | 317 | OG0074144 | Get ORF Coding potential... Type: noncoding Potential: -0.075 Folding energies... MFEI: -31.420 AMFE: -0.651 GC content %: 48.265 | |
| Atauschii_AET4Gv20009000.29 AET4Gv20009000.29 |
Low | No | 749 | OG0074145 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -36.836 AMFE: -0.678 GC content %: 54.339 | |
| Atauschii_AET4Gv20009000.32 AET4Gv20009000.32 |
High | No | 720 | OG0025226 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -38.222 AMFE: -0.704 GC content %: 54.306 | |
| Atauschii_AET4Gv20009000.33 AET4Gv20009000.33 |
High | No | 602 | OG0025226 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -38.887 AMFE: -0.701 GC content %: 55.482 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20009000.28 | SwissProt | 2021-04-01 | Q652P4 | 2.48e-19 |
| Atauschii_AET4Gv20009000.29 | SwissProt | 2021-04-01 | Q652P4 | 1.05e-4 |
| Atauschii_AET4Gv20009000.11 | SwissProt | 2021-04-01 | Q652P4 | 9.95e-16 |
| Atauschii_AET4Gv20009000.25 | SwissProt | 2021-04-01 | Q652P4 | 3.59e-13 |
| Atauschii_AET4Gv20009000.26 | SwissProt | 2021-04-01 | Q652P4 | 2.97e-13 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
