GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20012200 [ AET4Gv20012200]	4D	2495556	2498705	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20012200.2 AET4Gv20012200.2	Low	No	413	OG0009968		Get ORF Coding potential... Type: coding Potential: 2.377 Folding energies... MFEI: -41.041 AMFE: -0.678 GC content %: 60.533
Atauschii_AET4Gv20012200.4 AET4Gv20012200.4	Low	No	403	OG0009968		Get ORF Coding potential... Type: coding Potential: 2.376 Folding energies... MFEI: -41.290 AMFE: -0.679 GC content %: 60.794
Atauschii_AET4Gv20012200.5 AET4Gv20012200.5	Low	No	404	OG0074150		Get ORF Coding potential... Type: coding Potential: 2.033 Folding energies... MFEI: -36.510 AMFE: -0.647 GC content %: 56.436

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).