Atauschii AET4Gv20048100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20048100 [ AET4Gv20048100] |
4D | 10608639 | 10611299 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20048100.2 AET4Gv20048100.2 |
High | No | 893 | OG0009971 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -27.828 AMFE: -0.663 GC content %: 41.993 | |
| Atauschii_AET4Gv20048100.5 AET4Gv20048100.5 |
High | No | 601 | OG0009971 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -30.582 AMFE: -0.615 GC content %: 49.750 | |
| Atauschii_AET4Gv20048100.6 AET4Gv20048100.6 |
High | No | 363 | OG0009971 | Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -30.634 AMFE: -0.601 GC content %: 50.964 | |
| Atauschii_AET4Gv20048100.7 AET4Gv20048100.7 |
High | No | 1003 | OG0009971 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -25.902 AMFE: -0.589 GC content %: 43.968 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
