GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20066600 [ AET4Gv20066600]	4D	16867572	16879058	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20066600.11 AET4Gv20066600.11	High	No	425	OG0074256		Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -23.765 AMFE: -0.584 GC content %: 40.706
Atauschii_AET4Gv20066600.2 AET4Gv20066600.2	High	No	700	OG0074257		Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -27.986 AMFE: -0.657 GC content %: 42.571
Atauschii_AET4Gv20066600.8 AET4Gv20066600.8	High	No	217	OG0074258		Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -27.788 AMFE: -0.628 GC content %: 44.240

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).