Atauschii AET4Gv20088300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20088300 [ AET4Gv20088300] |
4D | 22117878 | 22122315 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20088300.1 AET4Gv20088300.1 |
High | No | 640 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -42.547 AMFE: -0.666 GC content %: 63.906 | |
| Atauschii_AET4Gv20088300.10 AET4Gv20088300.10 |
High | No | 1957 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -32.274 AMFE: -0.661 GC content %: 48.850 | |
| Atauschii_AET4Gv20088300.11 AET4Gv20088300.11 |
High | No | 2226 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -29.546 AMFE: -0.660 GC content %: 44.789 | |
| Atauschii_AET4Gv20088300.12 AET4Gv20088300.12 |
High | No | 777 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -28.082 AMFE: -0.613 GC content %: 45.817 | |
| Atauschii_AET4Gv20088300.2 AET4Gv20088300.2 |
High | No | 2663 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -33.402 AMFE: -0.663 GC content %: 50.394 | |
| Atauschii_AET4Gv20088300.3 AET4Gv20088300.3 |
High | No | 2782 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -32.570 AMFE: -0.657 GC content %: 49.569 | |
| Atauschii_AET4Gv20088300.4 AET4Gv20088300.4 |
High | No | 2382 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -33.346 AMFE: -0.664 GC content %: 50.252 | |
| Atauschii_AET4Gv20088300.5 AET4Gv20088300.5 |
High | No | 2624 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.311 Folding energies... MFEI: -33.338 AMFE: -0.662 GC content %: 50.343 | |
| Atauschii_AET4Gv20088300.6 AET4Gv20088300.6 |
High | No | 2783 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -32.659 AMFE: -0.661 GC content %: 49.371 | |
| Atauschii_AET4Gv20088300.7 AET4Gv20088300.7 |
High | No | 3258 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -33.103 AMFE: -0.675 GC content %: 49.048 | |
| Atauschii_AET4Gv20088300.8 AET4Gv20088300.8 |
High | No | 2864 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -32.503 AMFE: -0.659 GC content %: 49.337 | |
| Atauschii_AET4Gv20088300.9 AET4Gv20088300.9 |
High | No | 2963 | OG0001301 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -30.466 AMFE: -0.669 GC content %: 45.562 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
