GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20104300 [ AET4Gv20104300]	4D	28671184	28693713	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20104300.18 AET4Gv20104300.18	High	No	217	OG0074314		Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -26.682 AMFE: -0.597 GC content %: 44.700
Atauschii_AET4Gv20104300.19 AET4Gv20104300.19	High	No	757	OG0025251		Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -34.518 AMFE: -0.650 GC content %: 53.104
Atauschii_AET4Gv20104300.20 AET4Gv20104300.20	High	No	761	OG0025251		Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -35.874 AMFE: -0.671 GC content %: 53.482

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).