Atauschii AET4Gv20105900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20105900 [ AET4Gv20105900] |
4D | 29254609 | 29263904 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20105900.1 AET4Gv20105900.1 |
Low | No | 1664 | OG0009978 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -24.435 AMFE: -0.639 GC content %: 38.221 | |
| Atauschii_AET4Gv20105900.11 AET4Gv20105900.11 |
Low | No | 401 | OG0074316 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -24.788 AMFE: -0.625 GC content %: 39.651 | |
| Atauschii_AET4Gv20105900.12 AET4Gv20105900.12 |
High | No | 221 | OG0074317 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -20.724 AMFE: -0.509 GC content %: 40.724 | |
| Atauschii_AET4Gv20105900.4 AET4Gv20105900.4 |
Low | No | 1517 | OG0009978 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -23.065 AMFE: -0.617 GC content %: 37.376 | |
| Atauschii_AET4Gv20105900.6 AET4Gv20105900.6 |
High | No | 853 | OG0009978 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -25.369 AMFE: -0.613 GC content %: 41.383 | |
| Atauschii_AET4Gv20105900.7 AET4Gv20105900.7 |
Low | No | 1267 | OG0009978 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -25.635 AMFE: -0.650 GC content %: 39.463 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20105900.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20105900.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET4Gv20105900.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20105900.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
