Atauschii AET4Gv20128100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20128100 [ AET4Gv20128100] |
4D | 39056376 | 39061965 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20128100.10 AET4Gv20128100.10 |
Low | No | 2373 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.130 Folding energies... MFEI: -32.385 AMFE: -0.661 GC content %: 49.010 | |
| Atauschii_AET4Gv20128100.11 AET4Gv20128100.11 |
Low | No | 3071 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -30.397 AMFE: -0.660 GC content %: 46.044 | |
| Atauschii_AET4Gv20128100.17 AET4Gv20128100.17 |
Low | No | 2809 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.194 Folding energies... MFEI: -30.488 AMFE: -0.657 GC content %: 46.387 | |
| Atauschii_AET4Gv20128100.18 AET4Gv20128100.18 |
Low | No | 984 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -25.945 AMFE: -0.596 GC content %: 43.496 | |
| Atauschii_AET4Gv20128100.2 AET4Gv20128100.2 |
Low | No | 1240 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.197 Folding energies... MFEI: -25.976 AMFE: -0.581 GC content %: 44.677 | |
| Atauschii_AET4Gv20128100.21 AET4Gv20128100.21 |
Low | No | 2846 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.047 Folding energies... MFEI: -30.478 AMFE: -0.661 GC content %: 46.135 | |
| Atauschii_AET4Gv20128100.28 AET4Gv20128100.28 |
Low | No | 2774 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -30.714 AMFE: -0.659 GC content %: 46.611 | |
| Atauschii_AET4Gv20128100.3 AET4Gv20128100.3 |
Low | No | 1830 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.128 Folding energies... MFEI: -26.945 AMFE: -0.628 GC content %: 42.896 | |
| Atauschii_AET4Gv20128100.31 AET4Gv20128100.31 |
Low | No | 2583 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.031 Folding energies... MFEI: -31.475 AMFE: -0.660 GC content %: 47.658 | |
| Atauschii_AET4Gv20128100.33 AET4Gv20128100.33 |
Low | No | 3210 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: 0.000 Folding energies... MFEI: -30.243 AMFE: -0.663 GC content %: 45.607 | |
| Atauschii_AET4Gv20128100.38 AET4Gv20128100.38 |
Low | No | 2531 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -30.652 AMFE: -0.654 GC content %: 46.898 | |
| Atauschii_AET4Gv20128100.39 AET4Gv20128100.39 |
Low | No | 1326 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.092 Folding energies... MFEI: -25.581 AMFE: -0.584 GC content %: 43.816 | |
| Atauschii_AET4Gv20128100.41 AET4Gv20128100.41 |
Low | No | 2479 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -30.694 AMFE: -0.654 GC content %: 46.954 | |
| Atauschii_AET4Gv20128100.42 AET4Gv20128100.42 |
Low | No | 2589 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.115 Folding energies... MFEI: -31.634 AMFE: -0.656 GC content %: 48.204 | |
| Atauschii_AET4Gv20128100.43 AET4Gv20128100.43 |
Low | No | 2320 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.019 Folding energies... MFEI: -31.371 AMFE: -0.651 GC content %: 48.190 | |
| Atauschii_AET4Gv20128100.45 AET4Gv20128100.45 |
Low | No | 2227 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.158 Folding energies... MFEI: -31.576 AMFE: -0.647 GC content %: 48.810 | |
| Atauschii_AET4Gv20128100.49 AET4Gv20128100.49 |
Low | No | 2446 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.086 Folding energies... MFEI: -31.222 AMFE: -0.652 GC content %: 47.915 | |
| Atauschii_AET4Gv20128100.5 AET4Gv20128100.5 |
Low | No | 2399 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.023 Folding energies... MFEI: -30.942 AMFE: -0.653 GC content %: 47.353 | |
| Atauschii_AET4Gv20128100.50 AET4Gv20128100.50 |
Low | No | 3040 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.122 Folding energies... MFEI: -30.474 AMFE: -0.662 GC content %: 46.053 | |
| Atauschii_AET4Gv20128100.51 AET4Gv20128100.51 |
Low | No | 2403 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.112 Folding energies... MFEI: -32.056 AMFE: -0.660 GC content %: 48.564 | |
| Atauschii_AET4Gv20128100.52 AET4Gv20128100.52 |
Low | No | 1216 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.084 Folding energies... MFEI: -25.140 AMFE: -0.605 GC content %: 41.530 | |
| Atauschii_AET4Gv20128100.56 AET4Gv20128100.56 |
Low | No | 2238 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.015 Folding energies... MFEI: -31.591 AMFE: -0.649 GC content %: 48.704 | |
| Atauschii_AET4Gv20128100.57 AET4Gv20128100.57 |
Low | No | 1592 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.119 Folding energies... MFEI: -27.362 AMFE: -0.623 GC content %: 43.907 | |
| Atauschii_AET4Gv20128100.58 AET4Gv20128100.58 |
Low | No | 2819 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.129 Folding energies... MFEI: -30.816 AMFE: -0.657 GC content %: 46.932 | |
| Atauschii_AET4Gv20128100.59 AET4Gv20128100.59 |
Low | No | 3032 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.057 Folding energies... MFEI: -30.158 AMFE: -0.663 GC content %: 45.482 | |
| Atauschii_AET4Gv20128100.60 AET4Gv20128100.60 |
Low | No | 1196 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.083 Folding energies... MFEI: -25.686 AMFE: -0.580 GC content %: 44.314 | |
| Atauschii_AET4Gv20128100.64 AET4Gv20128100.64 |
Low | No | 2894 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -30.083 AMFE: -0.657 GC content %: 45.819 | |
| Atauschii_AET4Gv20128100.65 AET4Gv20128100.65 |
Low | No | 1946 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -27.616 AMFE: -0.643 GC content %: 42.960 | |
| Atauschii_AET4Gv20128100.66 AET4Gv20128100.66 |
Low | No | 2548 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -30.620 AMFE: -0.653 GC content %: 46.900 | |
| Atauschii_AET4Gv20128100.69 AET4Gv20128100.69 |
Low | No | 1015 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.479 Folding energies... MFEI: -26.532 AMFE: -0.596 GC content %: 44.532 | |
| Atauschii_AET4Gv20128100.70 AET4Gv20128100.70 |
High | No | 1134 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -24.965 AMFE: -0.586 GC content %: 42.593 | |
| Atauschii_AET4Gv20128100.71 AET4Gv20128100.71 |
High | No | 575 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -24.887 AMFE: -0.555 GC content %: 44.870 | |
| Atauschii_AET4Gv20128100.72 AET4Gv20128100.72 |
Low | No | 952 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -36.450 AMFE: -0.647 GC content %: 56.303 | |
| Atauschii_AET4Gv20128100.73 AET4Gv20128100.73 |
Low | No | 1240 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -33.653 AMFE: -0.658 GC content %: 51.129 | |
| Atauschii_AET4Gv20128100.9 AET4Gv20128100.9 |
Low | No | 2450 | OG0000133 | Get ORF Coding potential... Type: noncoding Potential: -0.086 Folding energies... MFEI: -31.433 AMFE: -0.653 GC content %: 48.122 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20128100.58 | SwissProt | 2021-04-01 | Q6Z6L4 | 9.26e-15 |
| Atauschii_AET4Gv20128100.28 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Atauschii_AET4Gv20128100.3 | SwissProt | 2021-04-01 | Q6Z6L4 | 2.86e-17 |
| Atauschii_AET4Gv20128100.50 | SwissProt | 2021-04-01 | Q6Z6L4 | 1.43e-14 |
| Atauschii_AET4Gv20128100.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; Unknown | |
| Atauschii_AET4Gv20128100.72 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20128100.17 | SwissProt | 2021-04-01 | Q6Z6L4 | 9.2e-15 |
| Atauschii_AET4Gv20128100.69 | SwissProt | 2021-04-01 | Q6Z6L4 | 7.04e-11 |
| Atauschii_AET4Gv20128100.49 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20128100.42 | SwissProt | 2021-04-01 | Q6Z6L4 | 8.06e-15 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
