Atauschii AET4Gv20142500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20142500 [ AET4Gv20142500] |
4D | 45822782 | 45830567 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20142500.1 AET4Gv20142500.1 |
High | No | 2687 | OG0074402 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -31.280 AMFE: -0.658 GC content %: 47.525 | |
| Atauschii_AET4Gv20142500.10 AET4Gv20142500.10 |
High | No | 3421 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -35.808 AMFE: -0.699 GC content %: 51.242 | |
| Atauschii_AET4Gv20142500.11 AET4Gv20142500.11 |
High | No | 3890 | OG0074403 | Get ORF Coding potential... Type: noncoding Potential: -0.698 Folding energies... MFEI: -33.568 AMFE: -0.680 GC content %: 49.357 | |
| Atauschii_AET4Gv20142500.12 AET4Gv20142500.12 |
High | No | 3744 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -34.175 AMFE: -0.686 GC content %: 49.840 | |
| Atauschii_AET4Gv20142500.13 AET4Gv20142500.13 |
High | No | 5174 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.711 Folding energies... MFEI: -32.066 AMFE: -0.687 GC content %: 46.656 | |
| Atauschii_AET4Gv20142500.14 AET4Gv20142500.14 |
High | No | 3134 | OG0074404 | Get ORF Coding potential... Type: noncoding Potential: -0.732 Folding energies... MFEI: -29.678 AMFE: -0.650 GC content %: 45.629 | |
| Atauschii_AET4Gv20142500.15 AET4Gv20142500.15 |
High | No | 4403 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -28.935 AMFE: -0.667 GC content %: 43.357 | |
| Atauschii_AET4Gv20142500.16 AET4Gv20142500.16 |
High | No | 4373 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -29.030 AMFE: -0.667 GC content %: 43.494 | |
| Atauschii_AET4Gv20142500.17 AET4Gv20142500.17 |
High | No | 2322 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -31.766 AMFE: -0.656 GC content %: 48.450 | |
| Atauschii_AET4Gv20142500.18 AET4Gv20142500.18 |
High | No | 3874 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -33.258 AMFE: -0.682 GC content %: 48.787 | |
| Atauschii_AET4Gv20142500.19 AET4Gv20142500.19 |
High | No | 3103 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -35.730 AMFE: -0.690 GC content %: 51.756 | |
| Atauschii_AET4Gv20142500.20 AET4Gv20142500.20 |
High | No | 3359 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -34.948 AMFE: -0.685 GC content %: 50.997 | |
| Atauschii_AET4Gv20142500.21 AET4Gv20142500.21 |
High | No | 2488 | OG0016315 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -31.636 AMFE: -0.660 GC content %: 47.910 | |
| Atauschii_AET4Gv20142500.22 AET4Gv20142500.22 |
High | No | 3254 | OG0025263 | Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -30.221 AMFE: -0.655 GC content %: 46.159 | |
| Atauschii_AET4Gv20142500.23 AET4Gv20142500.23 |
High | No | 4928 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -28.364 AMFE: -0.668 GC content %: 42.431 | |
| Atauschii_AET4Gv20142500.24 AET4Gv20142500.24 |
High | No | 4884 | OG0074405 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -28.198 AMFE: -0.665 GC content %: 42.404 | |
| Atauschii_AET4Gv20142500.25 AET4Gv20142500.25 |
High | No | 4153 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -33.718 AMFE: -0.683 GC content %: 49.362 | |
| Atauschii_AET4Gv20142500.26 AET4Gv20142500.26 |
High | No | 2373 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -39.102 AMFE: -0.706 GC content %: 55.415 | |
| Atauschii_AET4Gv20142500.27 AET4Gv20142500.27 |
High | No | 3746 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -33.988 AMFE: -0.687 GC content %: 49.493 | |
| Atauschii_AET4Gv20142500.28 AET4Gv20142500.28 |
High | No | 3328 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -35.751 AMFE: -0.689 GC content %: 51.923 | |
| Atauschii_AET4Gv20142500.29 AET4Gv20142500.29 |
High | No | 3825 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -34.016 AMFE: -0.686 GC content %: 49.569 | |
| Atauschii_AET4Gv20142500.3 AET4Gv20142500.3 |
High | No | 4488 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -29.029 AMFE: -0.669 GC content %: 43.360 | |
| Atauschii_AET4Gv20142500.30 AET4Gv20142500.30 |
High | No | 5743 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -31.229 AMFE: -0.687 GC content %: 45.481 | |
| Atauschii_AET4Gv20142500.31 AET4Gv20142500.31 |
High | No | 4043 | OG0025264 | Get ORF Coding potential... Type: noncoding Potential: -0.700 Folding energies... MFEI: -34.212 AMFE: -0.684 GC content %: 49.988 | |
| Atauschii_AET4Gv20142500.32 AET4Gv20142500.32 |
High | No | 3237 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.687 Folding energies... MFEI: -35.965 AMFE: -0.687 GC content %: 52.363 | |
| Atauschii_AET4Gv20142500.33 AET4Gv20142500.33 |
High | No | 3547 | OG0025265 | Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -34.657 AMFE: -0.689 GC content %: 50.268 | |
| Atauschii_AET4Gv20142500.34 AET4Gv20142500.34 |
High | No | 2251 | OG0016316 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -31.999 AMFE: -0.652 GC content %: 49.089 | |
| Atauschii_AET4Gv20142500.35 AET4Gv20142500.35 |
High | No | 3275 | OG0074406 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -29.829 AMFE: -0.659 GC content %: 45.282 | |
| Atauschii_AET4Gv20142500.36 AET4Gv20142500.36 |
High | No | 2459 | OG0016315 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -31.712 AMFE: -0.659 GC content %: 48.150 | |
| Atauschii_AET4Gv20142500.37 AET4Gv20142500.37 |
High | No | 2870 | OG0025266 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -30.523 AMFE: -0.660 GC content %: 46.237 | |
| Atauschii_AET4Gv20142500.38 AET4Gv20142500.38 |
High | No | 4094 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.700 Folding energies... MFEI: -33.131 AMFE: -0.680 GC content %: 48.730 | |
| Atauschii_AET4Gv20142500.39 AET4Gv20142500.39 |
High | No | 1565 | OG0016316 | Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -34.518 AMFE: -0.673 GC content %: 51.310 | |
| Atauschii_AET4Gv20142500.4 AET4Gv20142500.4 |
High | No | 4423 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -29.044 AMFE: -0.669 GC content %: 43.432 | |
| Atauschii_AET4Gv20142500.40 AET4Gv20142500.40 |
High | No | 949 | OG0016316 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -35.237 AMFE: -0.684 GC content %: 51.528 | |
| Atauschii_AET4Gv20142500.41 AET4Gv20142500.41 |
High | No | 817 | OG0074407 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -24.186 AMFE: -0.571 GC content %: 42.350 | |
| Atauschii_AET4Gv20142500.42 AET4Gv20142500.42 |
High | No | 626 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -35.735 AMFE: -0.652 GC content %: 54.792 | |
| Atauschii_AET4Gv20142500.5 AET4Gv20142500.5 |
High | No | 4930 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -28.396 AMFE: -0.669 GC content %: 42.454 | |
| Atauschii_AET4Gv20142500.6 AET4Gv20142500.6 |
High | No | 5120 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -28.355 AMFE: -0.669 GC content %: 42.402 | |
| Atauschii_AET4Gv20142500.7 AET4Gv20142500.7 |
High | No | 4460 | OG0074408 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -25.558 AMFE: -0.662 GC content %: 38.587 | |
| Atauschii_AET4Gv20142500.8 AET4Gv20142500.8 |
High | No | 3280 | OG0001303 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -30.527 AMFE: -0.660 GC content %: 46.280 | |
| Atauschii_AET4Gv20142500.9 AET4Gv20142500.9 |
High | No | 2596 | OG0001160 | Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -31.367 AMFE: -0.655 GC content %: 47.881 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
