Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET4Gv20161500 [ AET4Gv20161500] |
4D | 53632763 | 53635753 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET4Gv20161500.1 AET4Gv20161500.1 |
Low | No | 1018 | OG0006932 | Get ORF Coding potential... Type: noncoding Potential: -0.632 Folding energies... MFEI: -33.045 AMFE: -0.621 GC content %: 53.242 | |
Atauschii_AET4Gv20161500.2 AET4Gv20161500.2 |
Low | No | 995 | OG0006932 | Get ORF Coding potential... Type: noncoding Potential: -0.630 Folding energies... MFEI: -32.653 AMFE: -0.605 GC content %: 53.970 | |
Atauschii_AET4Gv20161500.3 AET4Gv20161500.3 |
Low | No | 982 | OG0006932 | Get ORF Coding potential... Type: noncoding Potential: -0.625 Folding energies... MFEI: -32.169 AMFE: -0.612 GC content %: 52.546 | |
Atauschii_AET4Gv20161500.4 AET4Gv20161500.4 |
Low | No | 761 | OG0006932 | Get ORF Coding potential... Type: noncoding Potential: -0.596 Folding energies... MFEI: -32.155 AMFE: -0.595 GC content %: 54.008 | |
Atauschii_AET4Gv20161500.7 AET4Gv20161500.7 |
Low | No | 1001 | OG0006932 | Get ORF Coding potential... Type: noncoding Potential: -0.627 Folding energies... MFEI: -32.148 AMFE: -0.609 GC content %: 52.747 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET4Gv20161500.7 | SwissProt | 2021-04-01 | Q9SRQ8 | 6.87e-7 |
Atauschii_AET4Gv20161500.1 | SwissProt | 2021-04-01 | Q9SRQ8 | 3.54e-7 |
Atauschii_AET4Gv20161500.2 | SwissProt | 2021-04-01 | Q9SRQ8 | 4.98e-7 |
Atauschii_AET4Gv20161500.3 | SwissProt | 2021-04-01 | Q9SRQ8 | 1.29e-6 |
Atauschii_AET4Gv20161500.4 | SwissProt | 2021-04-01 | Q9SRQ8 | 3.13e-7 |