GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20169700 [ AET4Gv20169700]	4D	57476028	57477684	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20169700.1 AET4Gv20169700.1	High	No	1399	OG0074460		Get ORF Coding potential... Type: noncoding Potential: -0.659 Folding energies... MFEI: -34.832 AMFE: -0.655 GC content %: 53.181
Atauschii_AET4Gv20169700.2 AET4Gv20169700.2	High	No	456	OG0074461		Get ORF Coding potential... Type: noncoding Potential: -0.551 Folding energies... MFEI: -51.096 AMFE: -0.713 GC content %: 71.711
Atauschii_AET4Gv20169700.3 AET4Gv20169700.3	High	No	527	OG0074462		Get ORF Coding potential... Type: noncoding Potential: -0.324 Folding energies... MFEI: -50.683 AMFE: -0.716 GC content %: 70.778

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).