GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20178800 [ AET4Gv20178800]	4D	61719829	61721467	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20178800.1 AET4Gv20178800.1	High	No	1312	OG0025277		Get ORF Coding potential... Type: noncoding Potential: -0.675 Folding energies... MFEI: -31.822 AMFE: -0.637 GC content %: 49.924
Atauschii_AET4Gv20178800.2 AET4Gv20178800.2	High	No	1108	OG0074488		Get ORF Coding potential... Type: noncoding Potential: -0.638 Folding energies... MFEI: -33.159 AMFE: -0.658 GC content %: 50.361
Atauschii_AET4Gv20178800.3 AET4Gv20178800.3	High	No	936	OG0004741		Get ORF Coding potential... Type: noncoding Potential: -0.596 Folding energies... MFEI: -28.889 AMFE: -0.655 GC content %: 44.124

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).