GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20210100 [ AET4Gv20210100]	4D	77588634	77591076	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20210100.2 AET4Gv20210100.2	High	No	1108	OG0006934		Get ORF Coding potential... Type: noncoding Potential: -0.707 Folding energies... MFEI: -35.226 AMFE: -0.645 GC content %: 54.603
Atauschii_AET4Gv20210100.3 AET4Gv20210100.3	High	No	452	OG0006934		Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -27.212 AMFE: -0.586 GC content %: 46.460
Atauschii_AET4Gv20210100.4 AET4Gv20210100.4	High	No	201	OG0006934		Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -28.856 AMFE: -0.523 GC content %: 55.224
Atauschii_AET4Gv20210100.5 AET4Gv20210100.5	High	No	438	OG0006934		Get ORF Coding potential... Type: noncoding Potential: -0.803 Folding energies... MFEI: -26.872 AMFE: -0.604 GC content %: 44.521
Atauschii_AET4Gv20210100.6 AET4Gv20210100.6	High	No	383	OG0006934		Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -22.272 AMFE: -0.592 GC content %: 37.598

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).