GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20216500 [ AET4Gv20216500]	4D	81431045	81435288	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20216500.1 AET4Gv20216500.1	High	No	917	OG0009989		Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -27.470 AMFE: -0.601 GC content %: 45.692
Atauschii_AET4Gv20216500.10 AET4Gv20216500.10	High	No	764	OG0009989		Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -27.919 AMFE: -0.597 GC content %: 46.728
Atauschii_AET4Gv20216500.3 AET4Gv20216500.3	Low	No	938	OG0009989		Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -27.079 AMFE: -0.600 GC content %: 45.096

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET4Gv20216500.3	RepBase (RepeatMasker)	2014-01-31	LTR/Gypsy

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).