Atauschii AET4Gv20237700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20237700 [ AET4Gv20237700] |
4D | 94304805 | 94308718 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20237700.1 AET4Gv20237700.1 |
Low | No | 955 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -28.534 AMFE: -0.586 GC content %: 48.691 | |
| Atauschii_AET4Gv20237700.10 AET4Gv20237700.10 |
Low | No | 2008 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -26.404 AMFE: -0.642 GC content %: 41.135 | |
| Atauschii_AET4Gv20237700.11 AET4Gv20237700.11 |
Low | No | 1070 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -27.757 AMFE: -0.612 GC content %: 45.327 | |
| Atauschii_AET4Gv20237700.12 AET4Gv20237700.12 |
Low | No | 1342 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -23.048 AMFE: -0.624 GC content %: 36.960 | |
| Atauschii_AET4Gv20237700.13 AET4Gv20237700.13 |
Low | No | 1319 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -22.691 AMFE: -0.621 GC content %: 36.543 | |
| Atauschii_AET4Gv20237700.14 AET4Gv20237700.14 |
Low | No | 1721 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -23.771 AMFE: -0.668 GC content %: 35.561 | |
| Atauschii_AET4Gv20237700.2 AET4Gv20237700.2 |
Low | No | 2271 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -26.742 AMFE: -0.641 GC content %: 41.700 | |
| Atauschii_AET4Gv20237700.3 AET4Gv20237700.3 |
Low | No | 855 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -28.363 AMFE: -0.567 GC content %: 50.058 | |
| Atauschii_AET4Gv20237700.4 AET4Gv20237700.4 |
Low | No | 1019 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -27.959 AMFE: -0.597 GC content %: 46.811 | |
| Atauschii_AET4Gv20237700.5 AET4Gv20237700.5 |
Low | No | 1345 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -27.636 AMFE: -0.610 GC content %: 45.279 | |
| Atauschii_AET4Gv20237700.6 AET4Gv20237700.6 |
Low | No | 1897 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -26.247 AMFE: -0.631 GC content %: 41.592 | |
| Atauschii_AET4Gv20237700.7 AET4Gv20237700.7 |
Low | No | 1123 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -27.524 AMFE: -0.603 GC content %: 45.681 | |
| Atauschii_AET4Gv20237700.8 AET4Gv20237700.8 |
Low | No | 1269 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -28.913 AMFE: -0.612 GC content %: 47.281 | |
| Atauschii_AET4Gv20237700.9 AET4Gv20237700.9 |
Low | No | 1778 | OG0000206 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -26.294 AMFE: -0.631 GC content %: 41.676 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20237700.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET4Gv20237700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET4Gv20237700.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20237700.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET4Gv20237700.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20237700.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET4Gv20237700.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20237700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET4Gv20237700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy | |
| Atauschii_AET4Gv20237700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
