Atauschii AET4Gv20247700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20247700 [ AET4Gv20247700] |
4D | 100190378 | 100193436 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20247700.1 AET4Gv20247700.1 |
Low | No | 2569 | OG0003743 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -30.226 AMFE: -0.631 GC content %: 47.917 | |
| Atauschii_AET4Gv20247700.11 AET4Gv20247700.11 |
Low | No | 1950 | OG0003743 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -30.410 AMFE: -0.624 GC content %: 48.769 | |
| Atauschii_AET4Gv20247700.14 AET4Gv20247700.14 |
Low | No | 1948 | OG0003743 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -29.471 AMFE: -0.623 GC content %: 47.331 | |
| Atauschii_AET4Gv20247700.15 AET4Gv20247700.15 |
High | No | 854 | OG0003743 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -34.508 AMFE: -0.652 GC content %: 52.927 | |
| Atauschii_AET4Gv20247700.2 AET4Gv20247700.2 |
Low | No | 2640 | OG0003743 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -30.299 AMFE: -0.635 GC content %: 47.689 | |
| Atauschii_AET4Gv20247700.3 AET4Gv20247700.3 |
Low | No | 2734 | OG0003743 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -30.560 AMFE: -0.646 GC content %: 47.330 | |
| Atauschii_AET4Gv20247700.7 AET4Gv20247700.7 |
Low | No | 2070 | OG0003743 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -29.565 AMFE: -0.649 GC content %: 45.556 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20247700.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Atauschii_AET4Gv20247700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Atauschii_AET4Gv20247700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Atauschii_AET4Gv20247700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Atauschii_AET4Gv20247700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Atauschii_AET4Gv20247700.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
