Atauschii AET4Gv20252100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20252100 [ AET4Gv20252100] |
4D | 102150285 | 102157194 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20252100.26 AET4Gv20252100.26 |
High | No | 223 | OG0074601 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -16.054 AMFE: -0.373 GC content %: 43.049 | |
| Atauschii_AET4Gv20252100.46 AET4Gv20252100.46 |
High | No | 500 | OG0016329 | Get ORF Coding potential... Type: noncoding Potential: -0.698 Folding energies... MFEI: -24.720 AMFE: -0.600 GC content %: 41.200 | |
| Atauschii_AET4Gv20252100.47 AET4Gv20252100.47 |
High | No | 987 | OG0009994 | Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -25.897 AMFE: -0.634 GC content %: 40.831 | |
| Atauschii_AET4Gv20252100.48 AET4Gv20252100.48 |
High | No | 826 | OG0009994 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -26.174 AMFE: -0.627 GC content %: 41.768 | |
| Atauschii_AET4Gv20252100.49 AET4Gv20252100.49 |
High | No | 696 | OG0009994 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -25.575 AMFE: -0.605 GC content %: 42.241 | |
| Atauschii_AET4Gv20252100.50 AET4Gv20252100.50 |
High | No | 679 | OG0009994 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -25.464 AMFE: -0.602 GC content %: 42.268 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
