Atauschii AET4Gv20290600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20290600 [ AET4Gv20290600] |
4D | 126499566 | 126506886 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20290600.18 AET4Gv20290600.18 |
Low | No | 629 | OG0074680 | Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -44.356 AMFE: -0.643 GC content %: 68.998 | |
| Atauschii_AET4Gv20290600.19 AET4Gv20290600.19 |
High | No | 247 | OG0074681 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -23.320 AMFE: -0.400 GC content %: 58.300 | |
| Atauschii_AET4Gv20290600.20 AET4Gv20290600.20 |
Low | No | 956 | OG0016334 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -35.303 AMFE: -0.638 GC content %: 55.335 | |
| Atauschii_AET4Gv20290600.21 AET4Gv20290600.21 |
Low | No | 1238 | OG0016334 | Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -28.425 AMFE: -0.637 GC content %: 44.588 | |
| Atauschii_AET4Gv20290600.22 AET4Gv20290600.22 |
High | No | 554 | OG0016334 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -33.953 AMFE: -0.615 GC content %: 55.235 | |
| Atauschii_AET4Gv20290600.23 AET4Gv20290600.23 |
High | No | 473 | OG0074682 | Get ORF Coding potential... Type: noncoding Potential: -1.365 Folding energies... MFEI: -33.298 AMFE: -0.613 GC content %: 54.334 | |
| Atauschii_AET4Gv20290600.24 AET4Gv20290600.24 |
Low | No | 1113 | OG0074683 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -26.208 AMFE: -0.631 GC content %: 41.509 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20290600.18 | SwissProt | 2021-04-01 | Q2QZ37 | 2.03e-14 |
| Atauschii_AET4Gv20290600.20 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET4Gv20290600.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Atauschii_AET4Gv20290600.24 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
