GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20312100 [ AET4Gv20312100]	4D	138262581	138265585	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20312100.1 AET4Gv20312100.1	High	No	623	OG0016336		Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -32.937 AMFE: -0.540 GC content %: 60.995
Atauschii_AET4Gv20312100.2 AET4Gv20312100.2	High	No	1158	OG0001158		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -32.228 AMFE: -0.620 GC content %: 51.986
Atauschii_AET4Gv20312100.3 AET4Gv20312100.3	High	No	1602	OG0001158		Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -31.685 AMFE: -0.647 GC content %: 49.001

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).