Atauschii AET4Gv20315600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20315600 [ AET4Gv20315600] |
4D | 141658688 | 141735986 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20315600.13 AET4Gv20315600.13 |
High | No | 2448 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -26.132 AMFE: -0.644 GC content %: 40.605 | |
| Atauschii_AET4Gv20315600.15 AET4Gv20315600.15 |
High | No | 1996 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -26.328 AMFE: -0.646 GC content %: 40.782 | |
| Atauschii_AET4Gv20315600.17 AET4Gv20315600.17 |
High | No | 2368 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -25.929 AMFE: -0.644 GC content %: 40.287 | |
| Atauschii_AET4Gv20315600.19 AET4Gv20315600.19 |
High | No | 1878 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -26.784 AMFE: -0.643 GC content %: 41.640 | |
| Atauschii_AET4Gv20315600.2 AET4Gv20315600.2 |
High | No | 1494 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -27.055 AMFE: -0.609 GC content %: 44.444 | |
| Atauschii_AET4Gv20315600.24 AET4Gv20315600.24 |
High | No | 965 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -24.332 AMFE: -0.602 GC content %: 40.415 | |
| Atauschii_AET4Gv20315600.25 AET4Gv20315600.25 |
High | No | 1417 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -23.931 AMFE: -0.646 GC content %: 37.050 | |
| Atauschii_AET4Gv20315600.26 AET4Gv20315600.26 |
High | No | 483 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -23.685 AMFE: -0.550 GC content %: 43.064 | |
| Atauschii_AET4Gv20315600.3 AET4Gv20315600.3 |
High | No | 1292 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -28.746 AMFE: -0.634 GC content %: 45.356 | |
| Atauschii_AET4Gv20315600.31 AET4Gv20315600.31 |
High | No | 2770 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -26.148 AMFE: -0.649 GC content %: 40.289 | |
| Atauschii_AET4Gv20315600.35 AET4Gv20315600.35 |
High | No | 2170 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.747 AMFE: -0.640 GC content %: 41.797 | |
| Atauschii_AET4Gv20315600.5 AET4Gv20315600.5 |
High | No | 2810 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -25.626 AMFE: -0.645 GC content %: 39.751 | |
| Atauschii_AET4Gv20315600.6 AET4Gv20315600.6 |
High | No | 1504 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -26.077 AMFE: -0.599 GC content %: 43.551 | |
| Atauschii_AET4Gv20315600.7 AET4Gv20315600.7 |
High | No | 1157 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -0.749 Folding energies... MFEI: -30.251 AMFE: -0.659 GC content %: 45.895 | |
| Atauschii_AET4Gv20315600.9 AET4Gv20315600.9 |
High | No | 2195 | OG0000871 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -26.515 AMFE: -0.646 GC content %: 41.048 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
