Atauschii AET4Gv20329400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20329400 [ AET4Gv20329400] |
4D | 159009893 | 159024531 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20329400.1 AET4Gv20329400.1 |
Low | No | 3167 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -32.100 AMFE: -0.682 GC content %: 47.048 | |
| Atauschii_AET4Gv20329400.10 AET4Gv20329400.10 |
Low | No | 1581 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -30.310 AMFE: -0.625 GC content %: 48.514 | |
| Atauschii_AET4Gv20329400.11 AET4Gv20329400.11 |
Low | No | 2019 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -29.143 AMFE: -0.667 GC content %: 43.685 | |
| Atauschii_AET4Gv20329400.12 AET4Gv20329400.12 |
Low | No | 1615 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.634 Folding energies... MFEI: -30.582 AMFE: -0.622 GC content %: 49.164 | |
| Atauschii_AET4Gv20329400.13 AET4Gv20329400.13 |
High | No | 866 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -27.564 AMFE: -0.618 GC content %: 44.573 | |
| Atauschii_AET4Gv20329400.14 AET4Gv20329400.14 |
Low | No | 2077 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -27.886 AMFE: -0.659 GC content %: 42.321 | |
| Atauschii_AET4Gv20329400.15 AET4Gv20329400.15 |
Low | No | 1105 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -26.860 AMFE: -0.627 GC content %: 42.805 | |
| Atauschii_AET4Gv20329400.16 AET4Gv20329400.16 |
Low | No | 1429 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -29.748 AMFE: -0.621 GC content %: 47.866 | |
| Atauschii_AET4Gv20329400.17 AET4Gv20329400.17 |
Low | No | 1002 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -27.375 AMFE: -0.626 GC content %: 43.713 | |
| Atauschii_AET4Gv20329400.18 AET4Gv20329400.18 |
Low | No | 1466 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -29.618 AMFE: -0.631 GC content %: 46.930 | |
| Atauschii_AET4Gv20329400.19 AET4Gv20329400.19 |
High | No | 672 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -23.586 AMFE: -0.566 GC content %: 41.667 | |
| Atauschii_AET4Gv20329400.2 AET4Gv20329400.2 |
Low | No | 2299 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -33.375 AMFE: -0.677 GC content %: 49.326 | |
| Atauschii_AET4Gv20329400.20 AET4Gv20329400.20 |
High | No | 732 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -24.126 AMFE: -0.624 GC content %: 38.661 | |
| Atauschii_AET4Gv20329400.22 AET4Gv20329400.22 |
Low | No | 876 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -26.689 AMFE: -0.630 GC content %: 42.352 | |
| Atauschii_AET4Gv20329400.3 AET4Gv20329400.3 |
Low | No | 3430 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -32.583 AMFE: -0.677 GC content %: 48.134 | |
| Atauschii_AET4Gv20329400.4 AET4Gv20329400.4 |
Low | No | 3595 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -32.242 AMFE: -0.674 GC content %: 47.816 | |
| Atauschii_AET4Gv20329400.5 AET4Gv20329400.5 |
Low | No | 3117 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -32.108 AMFE: -0.692 GC content %: 46.391 | |
| Atauschii_AET4Gv20329400.6 AET4Gv20329400.6 |
High | No | 1187 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -30.076 AMFE: -0.648 GC content %: 46.420 | |
| Atauschii_AET4Gv20329400.7 AET4Gv20329400.7 |
Low | No | 2290 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -28.585 AMFE: -0.661 GC content %: 43.275 | |
| Atauschii_AET4Gv20329400.8 AET4Gv20329400.8 |
Low | No | 2293 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -30.602 AMFE: -0.656 GC content %: 46.620 | |
| Atauschii_AET4Gv20329400.9 AET4Gv20329400.9 |
Low | No | 2577 | OG0000446 | Get ORF Coding potential... Type: noncoding Potential: -0.602 Folding energies... MFEI: -29.205 AMFE: -0.645 GC content %: 45.246 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20329400.22 | SwissProt | 2021-04-01 | Q6Z3U3 | 6.29e-4 |
| Atauschii_AET4Gv20329400.15 | SwissProt | 2021-04-01 | Q6Z3U3 | 1.2e-5 |
| Atauschii_AET4Gv20329400.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Atauschii_AET4Gv20329400.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20329400.3 | SwissProt | 2021-04-01 | Q6Z3U3 | 4.53e-5 |
| Atauschii_AET4Gv20329400.16 | SwissProt | 2021-04-01 | Q6Z3U3 | 7.29e-6 |
| Atauschii_AET4Gv20329400.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20329400.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20329400.1 | SwissProt | 2021-04-01 | Q6Z3U3 | 1.18e-4 |
| Atauschii_AET4Gv20329400.4 | SwissProt | 2021-04-01 | Q6Z3U3 | 3.16e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
