Atauschii AET4Gv20331200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20331200 [ AET4Gv20331200] |
4D | 160925466 | 160929407 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20331200.10 AET4Gv20331200.10 |
High | No | 2014 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -25.253 AMFE: -0.658 GC content %: 38.381 | |
| Atauschii_AET4Gv20331200.11 AET4Gv20331200.11 |
Low | No | 2921 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -25.837 AMFE: -0.659 GC content %: 39.199 | |
| Atauschii_AET4Gv20331200.12 AET4Gv20331200.12 |
Low | No | 2692 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -28.796 AMFE: -0.665 GC content %: 43.314 | |
| Atauschii_AET4Gv20331200.13 AET4Gv20331200.13 |
High | No | 449 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -22.561 AMFE: -0.589 GC content %: 38.307 | |
| Atauschii_AET4Gv20331200.14 AET4Gv20331200.14 |
Low | No | 2161 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -25.414 AMFE: -0.650 GC content %: 39.102 | |
| Atauschii_AET4Gv20331200.15 AET4Gv20331200.15 |
High | No | 3003 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -26.906 AMFE: -0.674 GC content %: 39.927 | |
| Atauschii_AET4Gv20331200.16 AET4Gv20331200.16 |
High | No | 645 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -27.039 AMFE: -0.636 GC content %: 42.481 | |
| Atauschii_AET4Gv20331200.17 AET4Gv20331200.17 |
High | No | 688 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -25.189 AMFE: -0.604 GC content %: 41.715 | |
| Atauschii_AET4Gv20331200.3 AET4Gv20331200.3 |
Low | No | 3025 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -26.099 AMFE: -0.666 GC content %: 39.174 | |
| Atauschii_AET4Gv20331200.4 AET4Gv20331200.4 |
Low | No | 3044 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -26.032 AMFE: -0.665 GC content %: 39.126 | |
| Atauschii_AET4Gv20331200.5 AET4Gv20331200.5 |
High | No | 2656 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -29.367 AMFE: -0.667 GC content %: 44.014 | |
| Atauschii_AET4Gv20331200.6 AET4Gv20331200.6 |
High | No | 2596 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -28.864 AMFE: -0.663 GC content %: 43.529 | |
| Atauschii_AET4Gv20331200.7 AET4Gv20331200.7 |
High | No | 3048 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -28.586 AMFE: -0.669 GC content %: 42.749 | |
| Atauschii_AET4Gv20331200.8 AET4Gv20331200.8 |
Low | No | 2772 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -29.257 AMFE: -0.665 GC content %: 43.975 | |
| Atauschii_AET4Gv20331200.9 AET4Gv20331200.9 |
Low | No | 2805 | OG0000872 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -24.578 AMFE: -0.647 GC content %: 37.968 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20331200.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20331200.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20331200.11 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20331200.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20331200.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20331200.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20331200.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
