Atauschii AET4Gv20360900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20360900 [ AET4Gv20360900] |
4D | 197574767 | 197584230 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20360900.15 AET4Gv20360900.15 |
Low | No | 4112 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -32.313 AMFE: -0.706 GC content %: 45.744 | |
| Atauschii_AET4Gv20360900.16 AET4Gv20360900.16 |
High | No | 982 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -0.205 Folding energies... MFEI: -40.458 AMFE: -0.692 GC content %: 58.452 | |
| Atauschii_AET4Gv20360900.17 AET4Gv20360900.17 |
Low | No | 1271 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -29.371 AMFE: -0.708 GC content %: 41.463 | |
| Atauschii_AET4Gv20360900.18 AET4Gv20360900.18 |
High | No | 2379 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -29.479 AMFE: -0.723 GC content %: 40.773 | |
| Atauschii_AET4Gv20360900.19 AET4Gv20360900.19 |
High | No | 2428 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -30.251 AMFE: -0.727 GC content %: 41.639 | |
| Atauschii_AET4Gv20360900.20 AET4Gv20360900.20 |
High | No | 2139 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -28.602 AMFE: -0.726 GC content %: 39.411 | |
| Atauschii_AET4Gv20360900.21 AET4Gv20360900.21 |
High | No | 1700 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -27.371 AMFE: -0.682 GC content %: 40.118 | |
| Atauschii_AET4Gv20360900.22 AET4Gv20360900.22 |
High | No | 1291 | OG0002916 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -26.716 AMFE: -0.674 GC content %: 39.659 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20360900.15 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20360900.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
