GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET4Gv20363500 [ AET4Gv20363500]	4D	201194704	201245528	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET4Gv20363500.10 AET4Gv20363500.10	Low	No	858	OG0074774		Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -33.730 AMFE: -0.643 GC content %: 52.448
Atauschii_AET4Gv20363500.23 AET4Gv20363500.23	High	No	450	OG0006943		Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -23.956 AMFE: -0.616 GC content %: 38.889
Atauschii_AET4Gv20363500.24 AET4Gv20363500.24	High	No	838	OG0006943		Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -28.616 AMFE: -0.709 GC content %: 40.334
Atauschii_AET4Gv20363500.25 AET4Gv20363500.25	High	No	837	OG0006943		Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -28.566 AMFE: -0.709 GC content %: 40.263
Atauschii_AET4Gv20363500.26 AET4Gv20363500.26	High	No	944	OG0006943		Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -28.157 AMFE: -0.713 GC content %: 39.513
Atauschii_AET4Gv20363500.27 AET4Gv20363500.27	High	No	476	OG0006943		Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -30.420 AMFE: -0.720 GC content %: 42.227

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET4Gv20363500.10	SwissProt	2021-04-01	F4JFJ3	7.24e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).