Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET4Gv20378200 [ AET4Gv20378200] |
4D | 221599091 | 221603637 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET4Gv20378200.21 AET4Gv20378200.21 |
Low | No | 1812 | OG0009999 | Get ORF Coding potential... Type: noncoding Potential: -0.037 Folding energies... MFEI: -29.459 AMFE: -0.659 GC content %: 44.702 | |
Atauschii_AET4Gv20378200.26 AET4Gv20378200.26 |
Low | No | 2191 | OG0009999 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -26.476 AMFE: -0.634 GC content %: 41.762 | |
Atauschii_AET4Gv20378200.27 AET4Gv20378200.27 |
Low | No | 1397 | OG0009999 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -26.743 AMFE: -0.624 GC content %: 42.878 | |
Atauschii_AET4Gv20378200.28 AET4Gv20378200.28 |
Low | No | 2269 | OG0009999 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -24.416 AMFE: -0.600 GC content %: 40.723 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET4Gv20378200.28 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET4Gv20378200.26 | SwissProt | 2021-04-01 | P43333 | 1.81e-5 |
Atauschii_AET4Gv20378200.27 | SwissProt | 2021-04-01 | Q9C9G4 | 7.79e-10 |
Atauschii_AET4Gv20378200.28 | SwissProt | 2021-04-01 | P43333 | 1.18e-5 |
Atauschii_AET4Gv20378200.26 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET4Gv20378200.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET4Gv20378200.21 | SwissProt | 2021-04-01 | P27061 | 1.76e-22 |