Atauschii AET4Gv20384800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20384800 [ AET4Gv20384800] |
4D | 227031120 | 227034357 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20384800.1 AET4Gv20384800.1 |
Low | No | 1475 | OG0000024 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -31.098 AMFE: -0.599 GC content %: 51.932 | |
| Atauschii_AET4Gv20384800.2 AET4Gv20384800.2 |
Low | No | 515 | OG0000024 | Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -28.757 AMFE: -0.644 GC content %: 44.660 | |
| Atauschii_AET4Gv20384800.3 AET4Gv20384800.3 |
Low | No | 1467 | OG0000024 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -30.116 AMFE: -0.576 GC content %: 52.284 | |
| Atauschii_AET4Gv20384800.4 AET4Gv20384800.4 |
Low | No | 1422 | OG0000024 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -29.923 AMFE: -0.571 GC content %: 52.391 | |
| Atauschii_AET4Gv20384800.5 AET4Gv20384800.5 |
High | No | 802 | OG0000024 | Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -33.130 AMFE: -0.598 GC content %: 55.362 | |
| Atauschii_AET4Gv20384800.6 AET4Gv20384800.6 |
Low | No | 2109 | OG0000024 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -27.302 AMFE: -0.585 GC content %: 46.705 | |
| Atauschii_AET4Gv20384800.7 AET4Gv20384800.7 |
Low | No | 1404 | OG0000024 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -29.736 AMFE: -0.570 GC content %: 52.137 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET4Gv20384800.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20384800.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20384800.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20384800.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET4Gv20384800.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET4Gv20384800.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
