Atauschii AET4Gv20410100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20410100 [ AET4Gv20410100] |
4D | 262897964 | 262902024 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20410100.1 AET4Gv20410100.1 |
High | No | 1539 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -34.022 AMFE: -0.641 GC content %: 53.086 | |
| Atauschii_AET4Gv20410100.10 AET4Gv20410100.10 |
High | No | 1205 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -31.295 AMFE: -0.630 GC content %: 49.710 | |
| Atauschii_AET4Gv20410100.11 AET4Gv20410100.11 |
High | No | 1142 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -31.296 AMFE: -0.630 GC content %: 49.650 | |
| Atauschii_AET4Gv20410100.12 AET4Gv20410100.12 |
High | No | 1370 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.627 Folding energies... MFEI: -29.920 AMFE: -0.626 GC content %: 47.810 | |
| Atauschii_AET4Gv20410100.13 AET4Gv20410100.13 |
High | No | 1324 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -30.853 AMFE: -0.632 GC content %: 48.792 | |
| Atauschii_AET4Gv20410100.14 AET4Gv20410100.14 |
High | No | 1236 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -29.660 AMFE: -0.626 GC content %: 47.411 | |
| Atauschii_AET4Gv20410100.15 AET4Gv20410100.15 |
High | No | 1359 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -29.088 AMFE: -0.619 GC content %: 47.020 | |
| Atauschii_AET4Gv20410100.16 AET4Gv20410100.16 |
High | No | 1126 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -28.597 AMFE: -0.615 GC content %: 46.536 | |
| Atauschii_AET4Gv20410100.17 AET4Gv20410100.17 |
High | No | 671 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -29.553 AMFE: -0.614 GC content %: 48.137 | |
| Atauschii_AET4Gv20410100.18 AET4Gv20410100.18 |
High | No | 1430 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -27.056 AMFE: -0.629 GC content %: 43.007 | |
| Atauschii_AET4Gv20410100.19 AET4Gv20410100.19 |
High | No | 2821 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -25.009 AMFE: -0.630 GC content %: 39.702 | |
| Atauschii_AET4Gv20410100.2 AET4Gv20410100.2 |
High | No | 1628 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -33.575 AMFE: -0.642 GC content %: 52.273 | |
| Atauschii_AET4Gv20410100.20 AET4Gv20410100.20 |
High | No | 812 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -27.635 AMFE: -0.586 GC content %: 47.167 | |
| Atauschii_AET4Gv20410100.21 AET4Gv20410100.21 |
High | No | 737 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -26.228 AMFE: -0.549 GC content %: 47.761 | |
| Atauschii_AET4Gv20410100.3 AET4Gv20410100.3 |
High | No | 2600 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -29.446 AMFE: -0.648 GC content %: 45.462 | |
| Atauschii_AET4Gv20410100.4 AET4Gv20410100.4 |
High | No | 1486 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -35.478 AMFE: -0.661 GC content %: 53.634 | |
| Atauschii_AET4Gv20410100.5 AET4Gv20410100.5 |
High | No | 1397 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -34.438 AMFE: -0.651 GC content %: 52.899 | |
| Atauschii_AET4Gv20410100.6 AET4Gv20410100.6 |
High | No | 1359 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -34.547 AMFE: -0.648 GC content %: 53.274 | |
| Atauschii_AET4Gv20410100.7 AET4Gv20410100.7 |
High | No | 1628 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -34.263 AMFE: -0.648 GC content %: 52.887 | |
| Atauschii_AET4Gv20410100.8 AET4Gv20410100.8 |
High | No | 1628 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -33.962 AMFE: -0.642 GC content %: 52.887 | |
| Atauschii_AET4Gv20410100.9 AET4Gv20410100.9 |
High | No | 1539 | OG0000447 | Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -34.672 AMFE: -0.645 GC content %: 53.736 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
