Atauschii AET4Gv20416500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20416500 [ AET4Gv20416500] |
4D | 270208810 | 270213841 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET4Gv20416500.1 AET4Gv20416500.1 |
High | No | 2410 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -26.361 AMFE: -0.678 GC content %: 38.880 | |
| Atauschii_AET4Gv20416500.10 AET4Gv20416500.10 |
High | No | 1254 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -26.013 AMFE: -0.558 GC content %: 46.651 | |
| Atauschii_AET4Gv20416500.11 AET4Gv20416500.11 |
High | No | 1597 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -32.210 AMFE: -0.633 GC content %: 50.908 | |
| Atauschii_AET4Gv20416500.12 AET4Gv20416500.12 |
High | No | 1590 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -32.006 AMFE: -0.628 GC content %: 50.943 | |
| Atauschii_AET4Gv20416500.13 AET4Gv20416500.13 |
High | No | 1889 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -31.392 AMFE: -0.623 GC content %: 50.397 | |
| Atauschii_AET4Gv20416500.14 AET4Gv20416500.14 |
High | No | 2184 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -30.362 AMFE: -0.626 GC content %: 48.535 | |
| Atauschii_AET4Gv20416500.15 AET4Gv20416500.15 |
High | No | 1943 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -32.156 AMFE: -0.638 GC content %: 50.386 | |
| Atauschii_AET4Gv20416500.16 AET4Gv20416500.16 |
High | No | 1698 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -33.298 AMFE: -0.637 GC content %: 52.238 | |
| Atauschii_AET4Gv20416500.17 AET4Gv20416500.17 |
High | No | 826 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -29.455 AMFE: -0.588 GC content %: 50.121 | |
| Atauschii_AET4Gv20416500.18 AET4Gv20416500.18 |
High | No | 1811 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -29.520 AMFE: -0.606 GC content %: 48.702 | |
| Atauschii_AET4Gv20416500.19 AET4Gv20416500.19 |
High | No | 1662 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -31.270 AMFE: -0.619 GC content %: 50.481 | |
| Atauschii_AET4Gv20416500.2 AET4Gv20416500.2 |
High | No | 2769 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -28.086 AMFE: -0.618 GC content %: 45.432 | |
| Atauschii_AET4Gv20416500.20 AET4Gv20416500.20 |
High | No | 1076 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -36.599 AMFE: -0.653 GC content %: 56.041 | |
| Atauschii_AET4Gv20416500.21 AET4Gv20416500.21 |
High | No | 1003 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -26.949 AMFE: -0.565 GC content %: 47.657 | |
| Atauschii_AET4Gv20416500.22 AET4Gv20416500.22 |
High | No | 1110 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -28.523 AMFE: -0.567 GC content %: 50.270 | |
| Atauschii_AET4Gv20416500.23 AET4Gv20416500.23 |
High | No | 1462 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -32.647 AMFE: -0.627 GC content %: 52.052 | |
| Atauschii_AET4Gv20416500.24 AET4Gv20416500.24 |
High | No | 1039 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -31.540 AMFE: -0.602 GC content %: 52.358 | |
| Atauschii_AET4Gv20416500.25 AET4Gv20416500.25 |
High | No | 953 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -24.124 AMFE: -0.554 GC content %: 43.547 | |
| Atauschii_AET4Gv20416500.26 AET4Gv20416500.26 |
High | No | 672 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -26.577 AMFE: -0.548 GC content %: 48.512 | |
| Atauschii_AET4Gv20416500.27 AET4Gv20416500.27 |
High | No | 1269 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -30.307 AMFE: -0.620 GC content %: 48.857 | |
| Atauschii_AET4Gv20416500.28 AET4Gv20416500.28 |
High | No | 821 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -24.836 AMFE: -0.565 GC content %: 43.971 | |
| Atauschii_AET4Gv20416500.29 AET4Gv20416500.29 |
High | No | 1437 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -31.754 AMFE: -0.630 GC content %: 50.383 | |
| Atauschii_AET4Gv20416500.3 AET4Gv20416500.3 |
High | No | 2538 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -27.896 AMFE: -0.615 GC content %: 45.390 | |
| Atauschii_AET4Gv20416500.30 AET4Gv20416500.30 |
High | No | 798 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -33.333 AMFE: -0.619 GC content %: 53.885 | |
| Atauschii_AET4Gv20416500.31 AET4Gv20416500.31 |
High | No | 313 | OG0074838 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -37.476 AMFE: -0.621 GC content %: 60.383 | |
| Atauschii_AET4Gv20416500.4 AET4Gv20416500.4 |
High | No | 2539 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -29.500 AMFE: -0.627 GC content %: 47.066 | |
| Atauschii_AET4Gv20416500.5 AET4Gv20416500.5 |
High | No | 2366 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -28.525 AMFE: -0.615 GC content %: 46.407 | |
| Atauschii_AET4Gv20416500.6 AET4Gv20416500.6 |
High | No | 2097 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -29.218 AMFE: -0.612 GC content %: 47.735 | |
| Atauschii_AET4Gv20416500.7 AET4Gv20416500.7 |
High | No | 2289 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -29.974 AMFE: -0.621 GC content %: 48.274 | |
| Atauschii_AET4Gv20416500.8 AET4Gv20416500.8 |
High | No | 2312 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -28.711 AMFE: -0.617 GC content %: 46.497 | |
| Atauschii_AET4Gv20416500.9 AET4Gv20416500.9 |
High | No | 2123 | OG0000190 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -29.133 AMFE: -0.616 GC content %: 47.292 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
